GetNCBITaxonomyChildNodes: GetNCBITaxonomyChildNodes

In UriNeri/NeriMisc: Neri's Miscellaneous helper functions

GetNCBITaxonomyChildNodes

Description

Forked from https://github.com/federiva/Monkeys-Working nodes.dmp.path is a STRING which is the path to the nodes.dmp file downloaded from NCBI: ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdmp.zip target.taxid is a STRING which is the upper NCBI taxonomy taxid from which we want to get the child's taxids The output of the function is a .csv file ("|" delimited) saved in the current working directory named child_nodes.csv The function assumes that the .sh script GetNCBITaxonomyChildNodes.sh is located in the working directory.

Usage

GetNCBITaxonomyChildNodes(nodes.dmp.path, target.taxid)

Arguments

target.taxid

Examples

GetNCBITaxonomyChildNodes

UriNeri/NeriMisc documentation built on Aug. 13, 2022, 4:37 p.m.