Grange2gbRecord: Grange2gbRecord

In UriNeri/NeriMisc: Neri's Miscellaneous helper functions

Grange2gbRecord

Description

Attempt to write out a grange object as an NCBI-like Genebank (".gbk") file.

Usage

Grange2gbRecord(
  Grng,
  sequnces,
  contig_name = "Tuliv",
  contig_length = 24864,
  source_name = "Tuliv",
  circ = "circular",
  DRNA = "DNA",
  organism = "Tuliv",
  keywords = "Virus",
  datee = "10-JAN-2021",
  type = "PHG",
  workdir = "/home/neri/scratch/X2gbk/",
  outputF = "/home/neri/scratch/X2gbk/testing.gbk",
  inputF = "/media/HDD1/uri/projects/Isra/Tuli/New/TuliV.fasta"
)

Arguments

inputF

Examples

Grange2gbRecord

UriNeri/NeriMisc documentation built on Aug. 13, 2022, 4:37 p.m.