README.md
In VHIRHepatiques/QSutils: Quasispecies Diversity
QSutils
Set of utility functions in viral quasispecies analysis with NGS data. Most are equally usefull in metagenomic studies. There are three main types of functions: (1) data manipulation and exploration; functions useful in converting reads to haplotypes and frequencies, repairing reads, intersecting strand haplotypes, and to visualize haplotype alignments. (2) diversity indices; functions to compute diversities and entropies; incidence, abundance and fuctional indices are considered. (3) data simulation; functions useful in generating random viral quasispecies data.
How to install the package
```{r,message=FALSE}
library(devtools)
install_git("https://github.com/VHIRHepatiques/QSutils")
library(QSutils)
```
Contact Information
Address any question/suggestion to Mercedes Guerrero-Murillo mergumu@gmail.com
VHIRHepatiques/QSutils documentation built on April 27, 2024, 10:29 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
QSutils
Set of utility functions in viral quasispecies analysis with NGS data. Most are equally usefull in metagenomic studies. There are three main types of functions: (1) data manipulation and exploration; functions useful in converting reads to haplotypes and frequencies, repairing reads, intersecting strand haplotypes, and to visualize haplotype alignments. (2) diversity indices; functions to compute diversities and entropies; incidence, abundance and fuctional indices are considered. (3) data simulation; functions useful in generating random viral quasispecies data.
How to install the package
```{r,message=FALSE} library(devtools) install_git("https://github.com/VHIRHepatiques/QSutils")
library(QSutils) ```
Contact Information
Address any question/suggestion to Mercedes Guerrero-Murillo mergumu@gmail.com
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.