README.md
In VHIRHepatiques/QSutils: Quasispecies Diversity
QSutils
Set of utility functions in viral quasispecies analysis with NGS data. Most are equally usefull in metagenomic studies. There are three main types of functions: (1) data manipulation and exploration; functions useful in converting reads to haplotypes and frequencies, repairing reads, intersecting strand haplotypes, and to visualize haplotype alignments. (2) diversity indices; functions to compute diversities and entropies; incidence, abundance and fuctional indices are considered. (3) data simulation; functions useful in generating random viral quasispecies data.
How to install the package
```{r,message=FALSE}
library(devtools)
install_git("https://github.com/VHIRHepatiques/QSutils")
library(QSutils)
```
Contact Information
Address any question/suggestion to Mercedes Guerrero-Murillo mergumu@gmail.com
VHIRHepatiques/QSutils documentation built on April 12, 2024, 12:25 p.m.
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QSutils
Set of utility functions in viral quasispecies analysis with NGS data. Most are equally usefull in metagenomic studies. There are three main types of functions: (1) data manipulation and exploration; functions useful in converting reads to haplotypes and frequencies, repairing reads, intersecting strand haplotypes, and to visualize haplotype alignments. (2) diversity indices; functions to compute diversities and entropies; incidence, abundance and fuctional indices are considered. (3) data simulation; functions useful in generating random viral quasispecies data.
How to install the package
```{r,message=FALSE} library(devtools) install_git("https://github.com/VHIRHepatiques/QSutils")
library(QSutils) ```
Contact Information
Address any question/suggestion to Mercedes Guerrero-Murillo mergumu@gmail.com
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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