Diverge: Generate a set of diverging haplotypes
In VHIRHepatiques/QSutils: Quasispecies Diversity
Diverge R Documentation
Generate a set of diverging haplotypes
Description
Generates a set of diverging haplotypes from the given DNA sequence. The
haplotypes produced share a pattern of divergence with an increasing number
of mutations.
Usage
Diverge(vm, seq)
Arguments
vm
Vector with number of diverging mutations to be generated.
seq
Reference sequence from which to generate the variants.
Details
max(vm) Positions in the given sequence are randomly generated.
A substitution is also randomly produced for each of these positions.
A haplotype is generated for each element in vm, so that it contains
vm[i] substitutions of those previously generated.
Value
Character string vector with the segregating haplotypes generated.
Author(s)
Mercedes Guerrero-Murillo and Josep Gregori
See Also
GetRandomSeq
Examples
set.seed(123)
m1 <- GetRandomSeq(50)
hpl <- Diverge(3:6,m1)
DottedAlignment(DNAStringSet(hpl))
VHIRHepatiques/QSutils documentation built on April 12, 2024, 12:25 p.m.
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| Diverge | R Documentation |
Generate a set of diverging haplotypes
Description
Generates a set of diverging haplotypes from the given DNA sequence. The haplotypes produced share a pattern of divergence with an increasing number of mutations.
Usage
Diverge(vm, seq)
Arguments
vm |
Vector with number of diverging mutations to be generated. |
seq |
Reference sequence from which to generate the variants. |
Details
max(vm) Positions in the given sequence are randomly generated.
A substitution is also randomly produced for each of these positions.
A haplotype is generated for each element in vm, so that it contains
vm[i] substitutions of those previously generated.
Value
Character string vector with the segregating haplotypes generated.
Author(s)
Mercedes Guerrero-Murillo and Josep Gregori
See Also
GetRandomSeq
Examples
set.seed(123)
m1 <- GetRandomSeq(50)
hpl <- Diverge(3:6,m1)
DottedAlignment(DNAStringSet(hpl))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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