ToyData_RVReads.fna: Fasta file with reverse reads.

Description Format See Also Examples

Description

Fasta file with reverse strand reads. Toy data used to illustrate the intersections of forward and reverse haplotypes with the function IntersectStrandHpls.

Format

Fasta file format. Each sequence starts with the symbol ">" followed by the sequence ID. Subsequent lines correspond to the nucleotide sequences or peptide sequences.

See Also

ToyData_FWReads.fna, IntersectStrandHpls

Examples

1
2
3
4
5
6
7
filepath_FW<-system.file("extdata","ToyData_FWReads.fna", package="QSutils")
lstFW <- ReadAmplSeqs(filepath_FW,type="DNA")
filepath_RV<-system.file("extdata","ToyData_RVReads.fna", package="QSutils")
lstRV <- ReadAmplSeqs(filepath_RV,type="DNA")

lstI <- IntersectStrandHpls(lstFW$nr,lstFW$hseqs,lstRV$nr,lstRV$hseqs)
lstI

VHIRHepatiques/QSutils documentation built on May 8, 2019, 1:44 p.m.