Unknown-Genotype.fna: Fasta file with reads of unknown genotype

Description Format See Also Examples

Description

Fasta file with hepatitis B virus sequences of unknown genotype. This is used to illustrate the genotyping of HBV sequences with the QSutils package.

Format

Fasta file format. Each sequence starts with the symbol ">" followed by the sequence ID. Subsequent lines correspond to the nucleotide sequences or peptide sequences.

See Also

DBrule

Examples

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filepath<-system.file("extdata","Unknown-Genotype.fna", package="QSutils")
lst2Geno <- ReadAmplSeqs(filepath,type="DNA")
hseq <- lst2Geno$hseq[1]
hseq

VHIRHepatiques/QSutils documentation built on Oct. 24, 2018, 12:06 p.m.