.cleanRawMaxQuant | R Documentation |
Clean raw output from MaxQuant
.cleanRawMaxQuant(
msstats_object,
protein_id_col,
remove_by_site = FALSE,
channel_columns = "Reporterintensitycorrected"
)
msstats_object |
object that inherits from MSstatsInputFiles class. |
protein_id_col |
character, name of a column with names of proteins. |
remove_by_site |
logical, if TRUE, proteins only identified by site will be removed. |
channel_columns |
character, regular expression that identifies channel columns in TMT data. |
data.table
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