dot-cleanRawMaxQuant: Clean raw output from MaxQuant

.cleanRawMaxQuantR Documentation

Clean raw output from MaxQuant

Description

Clean raw output from MaxQuant

Usage

.cleanRawMaxQuant(
  msstats_object,
  protein_id_col,
  remove_by_site = FALSE,
  channel_columns = "Reporterintensitycorrected"
)

Arguments

msstats_object

object that inherits from MSstatsInputFiles class.

protein_id_col

character, name of a column with names of proteins.

remove_by_site

logical, if TRUE, proteins only identified by site will be removed.

channel_columns

character, regular expression that identifies channel columns in TMT data.

Value

data.table


Vitek-Lab/MSstatsConvert documentation built on Nov. 21, 2024, 12:23 p.m.