dot-filterExact: Filter out specified symbols.

In Vitek-Lab/MSstatsConvert: Import Data from Various Mass Spectrometry Signal Processing Tools to MSstats Format

Filter out specified symbols.

Description

Filter out specified symbols.

Usage

.filterExact(
  input,
  col_name,
  filter_symbols,
  behavior,
  fill_value,
  filter,
  drop
)

Arguments

input	data.table preprocessed by one of the .cleanRaw* functions.
col_name	chr, name of the column that will be the base for filtering
filter_symbols	character vector of symbols that will be removed
behavior	chr, if "remove", values below/above the threshold will be removed, if "replace", they will be set to fill_value.
fill_value	if behavior = "replace", values below/above the threshold will be replaced with fill_value. Defaults to NA.
filter	lgl, if TRUE, decoy proteins will be removed from the data.
drop	lgl, if TRUE, column that contains decoy proteins will be dropped.

Value

data.table

Vitek-Lab/MSstatsConvert documentation built on April 18, 2024, 5:43 p.m.