dot-cleanRawPhilosopher: Clean raw Philosopher files

In Vitek-Lab/MSstatsConvert: Import Data from Various Mass Spectrometry Signal Processing Tools to MSstats Format

Clean raw Philosopher files

Description

Clean raw Philosopher files

Usage

.cleanRawPhilosopher(
  msstats_object,
  protein_id_col,
  peptide_id_col,
  channels,
  remove_shared_peptides
)

Arguments

msstats_object	object of class MSstatsPhilosopherFiles
protein_id_col	character name of a column that identifies proteins
peptide_id_col	character name of a column that identifies peptides
channels	character vector of channel labels
remove_shared_peptides	logical, if TRUE, shared peptides will be removed based on the IsUnique column from Philosopher output

Value

data.table

Vitek-Lab/MSstatsConvert documentation built on April 18, 2024, 5:43 p.m.