dot-cleanRawPDMSstats: Clean raw PD output

In Vitek-Lab/MSstatsConvert: Import Data from Various Mass Spectrometry Signal Processing Tools to MSstats Format

Clean raw PD output

Description

Clean raw PD output

Usage

.cleanRawPDMSstats(
  msstats_object,
  quantification_column,
  protein_id_column,
  sequence_column,
  remove_shared,
  run_column = "SpectrumFile"
)

Arguments

msstats_object	an object of class MSstatsSpectroMineFiles.
quantification_column	chr, name of a column used for quantification.
protein_id_column	chr, name of a column with protein IDs.
sequence_column	chr, name of a column with peptide sequences.
remove_shared	lgl, if TRUE, shared peptides will be removed.

Value

data.table

Vitek-Lab/MSstatsConvert documentation built on Jan. 22, 2025, 4:27 a.m.