Files in VoisinneG/InteRact
Analysis of affinity purification/tandem MS data
.DS_Store
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
InteRact.Rproj
LICENSE
NAMESPACE
R/.DS_Store
R/.gitignore
R/Annotations.R
R/Main_functions.R
R/Plotting_functions.R
R/data.R
README.md
README.rmd
_pkgdown.yml
data-raw/import_raw_data.R
data/Interactome_Cbl.rda
data/proteinGroups_Cbl.rda
docs/LICENSE-text.html
docs/_config.yml
docs/articles/InteRact.html
docs/articles/InteRact_files/figure-html/unnamed-chunk-10-1.png
docs/articles/InteRact_files/figure-html/unnamed-chunk-11-1.png
docs/articles/InteRact_files/figure-html/unnamed-chunk-3-1.png
docs/articles/InteRact_files/figure-html/unnamed-chunk-5-1.png
docs/articles/InteRact_files/figure-html/unnamed-chunk-9-1.png
docs/articles/Metadata.html
docs/articles/Metadata_files/figure-html/unnamed-chunk-8-1.png
docs/articles/Preprocessing.html
docs/articles/Preprocessing_files/figure-html/unnamed-chunk-2-1.png
docs/articles/index.html
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/InteRact-1.png
docs/reference/InteRact-2.png
docs/reference/InteRact-3.png
docs/reference/InteRact-4.png
docs/reference/InteRact-5.png
docs/reference/InteRact-6.png
docs/reference/InteRact.html
docs/reference/analyse_interactome.html
docs/reference/append_FDR.html
docs/reference/append_annotations.html
docs/reference/average_technical_replicates.html
docs/reference/compare_stoichio.html
docs/reference/compute_FDR_from_asymmetry.html
docs/reference/compute_correlations.html
docs/reference/discretize_values.html
docs/reference/dot_plot.html
docs/reference/estimate_Npep.html
docs/reference/filter_Proteins.html
docs/reference/filter_conditions.html
docs/reference/geom_mean.html
docs/reference/global_analysis.html
docs/reference/identify_conditions.html
docs/reference/identify_indirect_interactions.html
docs/reference/identify_interactors.html
docs/reference/index.html
docs/reference/mean_analysis.html
docs/reference/merge_conditions.html
docs/reference/merge_duplicate_groups.html
docs/reference/merge_proteome.html
docs/reference/moving_average.html
docs/reference/normalize_interactome.html
docs/reference/order_interactome.html
docs/reference/plot_2D_stoichio.html
docs/reference/plot_FDR_map.html
docs/reference/plot_QC.html
docs/reference/plot_comparison.html
docs/reference/plot_correlation_network.html
docs/reference/plot_density.html
docs/reference/plot_indirect_interactions.html
docs/reference/plot_per_condition.html
docs/reference/plot_stoichio.html
docs/reference/plot_volcanos.html
docs/reference/preprocess_data.html
docs/reference/proteinGroups_Cbl.html
docs/reference/rescale_median.html
docs/reference/restrict_network_degree.html
docs/reference/row_mean.html
docs/reference/row_sd.html
docs/reference/row_stoichio.html
docs/reference/row_ttest.html
docs/reference/smooth_interactome.html
docs/reference/summary_protein.html
docs/reference/summary_table.html
inst/extdata/proteinGroups_Cbl_metadata.csv
man/.DS_Store
man/.Rapp.history
man/.gitignore
man/InteRact.Rd
man/Interactome_Cbl.Rd
man/analyse_interactome.Rd
man/append_FDR.Rd
man/append_PPI.Rd
man/append_annotations.Rd
man/average_technical_replicates.Rd
man/compare_stoichio.Rd
man/compute_FDR_from_asymmetry.Rd
man/compute_correlations.Rd
man/discretize_values.Rd
man/dot_plot.Rd
man/estimate_Npep.Rd
man/filter_Proteins.Rd
man/filter_conditions.Rd
man/format_axis_log10.Rd
man/geom_mean.Rd
man/global_analysis.Rd
man/identify_conditions.Rd
man/identify_indirect_interactions.Rd
man/identify_interactors.Rd
man/mean_analysis.Rd
man/merge_conditions.Rd
man/merge_duplicate_groups.Rd
man/merge_proteome.Rd
man/moving_average.Rd
man/normalize_interactome.Rd
man/order_interactome.Rd
man/plot_2D_stoichio.Rd
man/plot_FDR_map.Rd
man/plot_QC.Rd
man/plot_comparison.Rd
man/plot_correlation_network.Rd
man/plot_density.Rd
man/plot_indirect_interactions.Rd
man/plot_per_condition.Rd
man/plot_stoichio.Rd
man/plot_volcanos.Rd
man/preprocess_data.Rd
man/proteinGroups_Cbl.Rd
man/rescale_median.Rd
man/restrict_network_degree.Rd
man/row_mean.Rd
man/row_sd.Rd
man/row_stoichio.Rd
man/row_ttest.Rd
man/smooth_interactome.Rd
man/summary_protein.Rd
man/summary_table.Rd
vignettes/.gitignore
vignettes/InteRact.Rmd
vignettes/Metadata.Rmd
vignettes/Preprocessing.Rmd
