tandem MS data

compare_stoichio

R Documentation

Compare stoichiometries or intensities between conditions using a t-test

Description

Compare stoichiometries or intensities between conditions using a t-test

Usage

compare_stoichio(
  res,
  var_comp = "stoichio_bio",
  names = res$names,
  replicates = res$replicates,
  ref_condition = res$conditions[1],
  test_conditions = setdiff(res$conditions, ref_condition),
  p_val_thresh = 0.05,
  fold_change_thresh = 3,
  ...
)

Arguments

`res`	an `Interactome`
`var_comp`	variable used to compare values across conditions. Can be either "stoichio_bio" or "norm_intensity_bio"
`names`	names selected
`replicates`	names of the biogical replicates used to compare stoichiometries
`ref_condition`	reference condition
`test_conditions`	set of conditions to be compared to `ref_condition`
`p_val_thresh`	Threshold for the t-test p-value
`fold_change_thresh`	Threshold for the t-test fold-change
`...`	Additionnal parameters passed to `row_ttest()`