plot_QC: Quality check plots for preprocessed AP-MS data

In VoisinneG/InteRact: Analysis of affinity purification/tandem MS data

Quality check plots for preprocessed AP-MS data

Description

Quality check plots for preprocessed AP-MS data

Usage

plot_QC(
  data,
  theme_name = "theme_bw",
  bait_name = NULL,
  na.imputed = TRUE,
  n_labels_skip = 0,
  minor_ticks = 2:9
)

Arguments

data	an Interactome or preprocessed data as obtained using function preprocess_data()
theme_name	name of the ggplot2 theme function to use ('theme_gray' by default)
bait_name	name of the bait
na.imputed	logical. Use data with imputed missing values?
n_labels_skip	Number of labels skipped between two displayed labels on y axis.
minor_ticks	set of multiplicative factors used to generate minor ticks (set to 2:9 by default). Ignored if NULL.

Value

Several QC plots

VoisinneG/InteRact documentation built on May 17, 2022, 11:40 p.m.