tandem MS data

order_interactome

R Documentation

Order proteins within an `InteRactome`

Description

Order proteins within an InteRactome

Usage

order_interactome(
  res,
  idx = NULL,
  var_min_p_val = "min_p_val",
  p_val_breaks = c(1, 0.1, 0.05, 0.01),
  var_order = "max_stoichio",
  bait_first = TRUE
)

Arguments

`res`	an `InteRactome`
`idx`	indices used to order proteins. Overrides ordering using `var_p_val`, `p_val_breaks` and `var_order`
`var_min_p_val`	name of the p-value variable
`p_val_breaks`	numeric vector to discretize p-value
`var_order`	Variable used to order interactors for each p-value
`bait_first`	logical, puts bait in first position