tandem MS data

dot_plot

R Documentation

Dot plot representation of matrices

Description

Dot plot representation of matrices

Usage

dot_plot(
  Dot_Size,
  Dot_Color = NULL,
  title = "Dot Plot",
  size_range = c(0, 5.5),
  size_limits = range(Dot_Size),
  size_breaks = NULL,
  size_var = "size",
  color_var = "color",
  color_values = c("red", "purple", "blue", "black"),
  size_label_y = NULL,
  size_label_x = NULL,
  theme_name = "theme_bw"
)

Arguments

`Dot_Size`	a matrix of dot sizes
`Dot_Color`	a matrix of dot colors (optionnal)
`title`	plot title
`size_range`	range of dot sizes to display
`size_limits`	limits for dot size (as used in `ggplot2::scale_radius()`)
`size_breaks`	breaks used for dot size scale
`size_var`	name of the variable corresponding to dot size
`color_var`	name of the variable corresponding to dot color
`color_values`	values parameter passed to `scale_color_manual()`
`size_label_y`	size of y-axis labels
`size_label_x`	size of x-axis labels
`theme_name`	name of the ggplot2 theme function to use ('theme_gray' by default)