In VoisinneG/flowR: R-shiny interface for the analysis of flow cytometry data

Install flowR on Windows (inside CIML)

To install flowR, you will need R version 3.6.1 or later

Setup R in windows

If you use windows 10, you can get R-3.6.1 and Rstudio using the 'Centre Logiciel':

• go to 'Centre Logiciel'
• download R-3.6.1
• download Rstudio
• open Rstudio

Now we need to create a R library folder with read/write permissions. To do that using R studio, type in the console :

dir.create("C:/Temp/R_library")
cat(".libPaths('C:/Temp/R_library')\n", file = paste0(getwd(), "/.Rprofile"))

Now close and restart Rstudio. By default, all your packages will be saved in C:/Temp/R_library.

Change working directory

setwd("C:/Temp/R_library")

Install flowR

install.packages("devtools")
devtools::install_github("VoisinneG/flowR")

Run flowR GUI

Load flowR package and run

library(flowR)
run_flowR()

VoisinneG/flowR documentation built on June 1, 2021, 6:42 p.m.