Lyme_GSE63085: Example RNAseq dataset [Human]

In WTaoUMC/RegEnrich: Gene regulator enrichment analysis

Description

Data from an RNA sequencing experiment on peripheral mononuclear blood cells (PBMC) of Lyme disease patients against healthy controls. It contains a gene expression (FPKM) table (data frame) and a sample information table (data frame).

Usage

data(Lyme_GSE63085)

Format

A list of 2 elements: FPKM and sampleInfo. FPKM is the 'Fragments Per Kilobase of transcript per Million mapped reads' data, which is a 5000 (genes) * 52 (samples) data frame. sampleInfo is the information of samples, which is 52 (samples) * 9 (features) data frame. The full version of FPKM table contains 23615 rows, which can be downloaded from GEO database.

Source

URL

References

Bouquet et al. (2016) mBio 7(1): e00100-16 (PubMed)

WTaoUMC/RegEnrich documentation built on Aug. 4, 2021, 4:11 p.m.