reexports: Objects exported from other packages

In WTaoUMC/RegEnrich: Gene regulator enrichment analysis

Description

These objects are imported from other packages. Follow the links below to see their documentation.

magrittr

%>%

Examples

# library(RegEnrich)
data("Lyme_GSE63085")
data("TFs")

data = log2(Lyme_GSE63085$FPKM + 1)
colData = Lyme_GSE63085$sampleInfo
data1 = data[seq(2000), ]

design = model.matrix(~0 + patientID + week, data = colData)

# Initializing a 'RegenrichSet' object
object = RegenrichSet(expr = data1,
                      colData = colData,
                      method = 'limma', minMeanExpr = 0,
                      design = design,
                      contrast = c(rep(0, ncol(design) - 1), 1),
                      networkConstruction = 'COEN',
                      enrichTest = 'FET')
                      
# Using %>%
object %>% regenrich_diffExpr()

WTaoUMC/RegEnrich documentation built on Aug. 4, 2021, 4:11 p.m.