totalcn_chrom_plot: Plot total copy number split per chromosome
In Wedge-Oxford/battenberg: Battenberg subclonal copy number caller

totalcn_chrom_plot

R Documentation

Plot total copy number split per chromosome

Description

This plot contains estimated total copy number from logR, the copy number fit in different colours and a few general stats. It is meant as a single figure replacement for the per chromosome subclones.png figures that can be used for refitting.

Usage

totalcn_chrom_plot(samplename, subclones, logr, outputfile, purity)

Arguments

`samplename`	Name of the sample for the plot title
`subclones`	A subclones.txt file read in as a data.frame
`logr`	The raw logR read in as a data.frame
`outputfile`	Full path of file where the figure is to be stored
`purity`	The samples purity estimate