Files in WetRobot/popEpi

Functions for Epidemiological Analysis using Population Data

.Rbuildignore

.github/.gitignore

.github/workflows/R-CMD-check.yaml

.github/workflows/rhub.yaml

.github/workflows/test-coverage.yaml

.gitignore

DESCRIPTION

LICENSE

LICENSE.md

NAMESPACE

NEWS.md R/S3_definitions.R R/Surv.R R/aggregating.R R/data_document.R R/direct_adjusting.R R/evaluation.R R/flexyargs.R R/fractional_years.R R/incidence_rates.R R/incidence_rates_utils.R R/lexpand.R R/long_df_and_array.R R/ltable.R R/mean_survival.R R/popEpi-package.R R/pophaz.R R/prevalence.R R/relative_poisson.R R/relative_poisson_net_survival.R R/sir.R R/sir_utils.R R/splitLexisDT.R R/splitMulti.R R/splitting_utility_functions.R R/startup_message.R R/survival_aggregated.R R/survival_lexis.R R/survival_utility_functions.R R/utility_functions.R R/weighted_table.R README.Rmd README.md

codecov.yml

cran-comments.md data-raw/data.R data-raw/meanpop_fi.R

data-raw/meanpop_fi.csv

data-raw/survmean_test_data.R

data/ICSS.rdata

data/meanpop_fi.rda

data/popmort.rdata

data/sibr.rdata

data/sire.rdata

data/stdpop101.rdata

data/stdpop18.rdata

dev/.gitignore

dev/01_misc.R dev/02_local_check.R dev/03_remote_check.R dev/04_revdep_check.R dev/05_final_touches.R dev/06_release.R dev/07_post_cran_accept.R dev/utils.R

inst/WORDLIST

man-roxygen/survival_doc_template.R man/ICSS.Rd man/Lexis_fpa.Rd man/RPL.Rd man/Surv.Rd man/adjust.Rd man/aggre.Rd man/all_names_present.Rd man/array_df_ratetable_utils.Rd man/as.Date.yrs.Rd man/as.aggre.Rd man/cast_simple.Rd man/cut_bound.Rd man/direct_standardization.Rd man/fac2num.Rd man/flexible_argument.Rd man/get.yrs.Rd man/is.Date.Rd man/is_leap_year.Rd man/lexpand.Rd man/lines.sirspline.Rd man/lines.survmean.Rd man/lines.survtab.Rd man/lower_bound.Rd man/ltable.Rd man/meanpop_fi.Rd man/na2zero.Rd man/plot.rate.Rd man/plot.sir.Rd man/plot.sirspline.Rd man/plot.survmean.Rd man/plot.survtab.Rd man/poisson.ci.Rd man/popEpi-package.Rd man/pophaz.Rd man/popmort.Rd man/prepExpo.Rd man/print.aggre.Rd man/print.rate.Rd man/print.survtab.Rd man/rate.Rd man/rate_ratio.Rd man/relpois.Rd man/relpois_ag.Rd man/robust_values.Rd man/rpcurve.Rd man/setaggre.Rd man/setclass.Rd man/setcolsnull.Rd man/sibr.Rd man/sir.Rd man/sir_exp.Rd man/sir_ratio.Rd man/sire.Rd man/sirspline.Rd man/splitLexisDT.Rd man/splitMulti.Rd man/stdpop101.Rd man/stdpop18.Rd man/summary.aggre.Rd man/summary.survtab.Rd man/survmean.Rd man/survtab.Rd man/survtab_ag.Rd man/try2int.Rd tests/testthat.R

tests/testthat/survmean_test_data_01.rds

tests/testthat/test_Surv.R tests/testthat/test_aggre.R tests/testthat/test_epi.R tests/testthat/test_expo.R tests/testthat/test_lexpand.R tests/testthat/test_prevtab.R tests/testthat/test_rate.R tests/testthat/test_relpois_mean_curve.R tests/testthat/test_sir.R tests/testthat/test_splitLexisDT.R tests/testthat/test_splitMulti.R tests/testthat/test_splitting_attributes.R tests/testthat/test_splitting_breaks.R tests/testthat/test_splitting_randomly_on_fixed_data.R tests/testthat/test_splitting_randomly_on_random_data.R tests/testthat/test_survmean.R tests/testthat/test_survtab_adjusted.R tests/testthat/test_survtab_bad_surv_ints.R tests/testthat/test_survtab_observed.R tests/testthat/test_survtab_relative.R tests/testthat/test_survtab_usage.R tests/testthat/test_utils.R tests/testthat/test_weighter.R

vignettes/.gitignore

vignettes/sir.Rmd vignettes/survtab_examples.Rmd

WetRobot/popEpi documentation built on May 8, 2024, 1:23 p.m.