PASTailMerge: PASTailMerge

In XHWUlab/PolyAtailor: a toolkit for analyzing poly(A) tail length dynamics from xxx RNA-seq data

Description

Merging PA information and tail information.

Usage

PASTailMerge(tailinfo, PAinfo)

Arguments

tailinfo	A dataframe that contains the tail information of all reads.
PAinfo	A dataframe that contains the PA information of all reads.

Details

Although we have identified the PA site and tail information for each sequence, the two tables are currently independent. We need to use the common column (reads_num) of the two tables to merge the data to produce the final data table.

Value

This function returns a dataframe that contains both PA information (including PA gene, type based, chromosome, and so on) and tail information.

Examples

tailinfo = "the/path/of/tailinfo.txt"
PAinfo = "the/path/of/PAinfo.txt"
finaldata <- PASTailMerge(tailinfo,PAinfo)

XHWUlab/PolyAtailor documentation built on Dec. 28, 2021, 12:13 a.m.