plotGenePAnumbers: plotGenePAnumbers

In XHWUlab/PolyAtailor: a toolkit for analyzing poly(A) tail length dynamics from xxx RNA-seq data

Description

Plot the gene frequency distribution with different number of PA sites.

Usage

plotGenePAnumbers(PAdf, resultpath, colorOfBar)

Arguments

PAdf	A dataframe that contains the PA information of all reads, Contains at least three columns: PAID, gene, ftr.
resultpath	The specified path to save barplot.
colorOfBar	The color of barplot, as input in hexadecimal form, defaults to "#196BE1".

Details

Plot the gene frequency distribution with different number of PA sites. Genes were divided into five groups, each containing the number of PA sites 1, 2, 3, 4, 5 and greater than 5, respectively.

Value

A barplot.

See Also

[plotGenePAnumbers()] to plot the gene frequency distribution with different number of PA sites.

Other Visualization functions: DSA_UpsetPlot(), DSA_ViolinPlot(), PALdsa(), nonAanalysis(), plotPADistribution(), plotPALDistribution(), plotPASignals(), tailViso()

Examples

data(PAs)
p <- plotGenePAnumbers(PAs,"./","#DF7C7D")

XHWUlab/PolyAtailor documentation built on Dec. 28, 2021, 12:13 a.m.