nonAanalysis: nonAanalysis

In XHWUlab/PolyAtailor: a toolkit for analyzing poly(A) tail length dynamics from xxx RNA-seq data

Description

Quantify and Statistics the nonA base in tail.

Usage

nonAanalysis(tailinfo, justOneTail)

Arguments

tailinfo	A tail information table containing at least PAL, sample name, tail sequence, chain direction, and gene infomation.
justOneTail	Boolean value. Indicates whether to analyze only data of type one-tail, which defaults to T.

Details

After users input the tail information table, we will quantify the non-A base content in each tail, and count the number of reads with non-A base tail in each sample and the proportion of non-A base content in each sample.

Value

A large list containing quantitative data tables and statistical graphs.The two figures respectively represent the column chart of the number and proportion of reads with non-A bases in each sample and the specific occurrence frequency of non-A bases in each sample.

See Also

[tailViso()] to visualize tails using heat maps and logos.

Other Visualization functions: DSA_UpsetPlot(), DSA_ViolinPlot(), PALdsa(), plotGenePAnumbers(), plotPADistribution(), plotPALDistribution(), plotPASignals(), tailViso()

Examples

data(AnnotedTails)
re <- nonAanalysis(AnnotedTails)
re$p1
re$p2
re$p3
nonAre <- re$nonAinfo

XHWUlab/PolyAtailor documentation built on Dec. 28, 2021, 12:13 a.m.