plotPADistribution: plotPADistribution

In XHWUlab/PolyAtailor: a toolkit for analyzing poly(A) tail length dynamics from xxx RNA-seq data

Description

Plot the gene region distribution of PA sites.

Usage

plotPADistribution(PAdf, resultpath, colorOfBar)

Arguments

PAdf	A dataframe that contains the PA information of all reads, Contains at least three columns: PAID, gene, ftr.
resultpath	The specified path to save barplot.
colorOfBar	The color of barplot, as input in hexadecimal form, defaults to "#196BE1".

Details

Plot the gene region distribution of PA sites, including "3UTR", "5UTR", "CDS", "exon", "intergenic", "intron". Finally, we will save the PA locus distribution barpllot in PPTX format to the path you specified.

Value

A barplot.

See Also

[plotGenePAnumbers()] to plot the gene frequency distribution with different number of PA sites. @export

Other Visualization functions: DSA_UpsetPlot(), DSA_ViolinPlot(), PALdsa(), nonAanalysis(), plotGenePAnumbers(), plotPALDistribution(), plotPASignals(), tailViso()

Examples

data(PAs)
p <- plotPADistribution(PAs,"./","#9BBFDC")

XHWUlab/PolyAtailor documentation built on Dec. 28, 2021, 12:13 a.m.