Man pages for XiangyuLuo/BUScorrect
Batch Effects Correction with Unknown Subtypes
| adjusted_values | Obtain adjusted expression values from the output by BUSgibbs |
| baseline_expression_values | Obtain the baseline expression values from the output by... |
| BIC_BUS | Obtain BIC form the output by BUSgibbs |
| BUScorrect-package | Batch Effects Correction with Unknown Subtypes |
| BUSexample_data | A simulated data set |
| BUSgibbs | Batch Effects Correction and Subtype Discovery using Gibbs... |
| calculate_EPSR_gamma | Calculate the estimated potential scale reduction factors... |
| calculate_EPSR_mu | Calculate the estimated potential scale reduction factors... |
| calculate_EPSR_sigma_sq | Calculate the estimated potential scale reduction factors... |
| estimate_IG_indicators | Estimate the intrinsic gene indicators |
| IG_index | Obtain the intrinsic gene indices |
| location_batch_effects | Obtain the location batch effects from the output by BUSgibbs |
| postprob_DE | Calculate the posterior probability of being differentially... |
| postprob_DE_thr_fun | Select the the posterior probability threshold to control the... |
| print.BUSfits | Print the output by BUSgibbs |
| scale_batch_effects | Obtain the scale batch effects from the output by 'BUSgibbs' |
| subtype_effects | Obtain the subtype effects from the output by 'BUSgibbs' |
| Subtypes | Obtain the subtype indicators from the output by 'BUSgibbs' |
| summary.BUSfits | Summary the output by 'BUSgibbs' |
| visualize_data | Visualize the gene expression data from multiple batches |
