print.BUSfits: Print the output by BUSgibbs

In XiangyuLuo/BUScorrect: Batch Effects Correction with Unknown Subtypes

Description

Call the function to print the output by BUSgibbs.

Usage

## S3 method for class 'BUSfits'
print(x, ...)

Arguments

x	The BUSfits object output by the function BUSgibbs.
...	not used.

Value

print the results from the output by BUSgibbs.

Author(s)

Xiangyu Luo

Examples

rm(list = ls(all = TRUE))  
set.seed(123)
#a toy example, there are 6 samples and 20 genes in each batch
example_Data <- list()

#batch 1
example_Data[[1]] <- rbind(matrix(c(1,1,5,5,10,10,
						3,3,7,7,12,12), ncol=6, byrow=TRUE), matrix(c(1,2),nrow=18, ncol=6))

#batch 2
batch2_effect <- c(2,2,2,1,1)
example_Data[[2]] <- rbind(matrix(c(1,1,5,5,10,10,
						3,3,7,7,12,12), ncol=6, byrow=TRUE), matrix(c(1,2),nrow=18, ncol=6)) + batch2_effect

#batch 3
batch3_effect <- c(3,2,1,1,2)
example_Data[[3]] <- rbind(matrix(c(1,1,5,5,10,10,
						3,3,7,7,12,12), ncol=6, byrow=TRUE), matrix(c(1,2),nrow=18, ncol=6)) + batch3_effect
set.seed(123)
BUSfits <- BUSgibbs(example_Data, n.subtypes = 3, n.iterations = 100, showIteration = FALSE)
print(BUSfits)

XiangyuLuo/BUScorrect documentation built on June 14, 2019, 3:31 p.m.