addUMAP: Adds a UMAP projection

In YosefLab/FastProjectR: Functional interpretation of single cell RNA-seq latent manifolds

Adds a UMAP projection

Description

Adds a UMAP projection

Usage

addUMAP(
  object,
  K = object@params$numNeighbors,
  name = "UMAP",
  source = "LatentSpace"
)

Arguments

object	the VISION object
K	Number of neighbors to use in UMAP projection.
name	label to use for this projection
source	coordinates to use to compute tSNE Choices are either "LatentSpace" (default) or "Proteins"

Value

VISION object with the projection added to @Projections slot

YosefLab/FastProjectR documentation built on Feb. 15, 2023, 6:21 a.m.