addUMAP: Adds a UMAP projection

View source: R/AnalysisFunctions.R

addUMAPR Documentation

Adds a UMAP projection

Description

Adds a UMAP projection

Usage

addUMAP(
  object,
  K = object@params$numNeighbors,
  name = "UMAP",
  source = "LatentSpace"
)

Arguments

object

the VISION object

K

Number of neighbors to use in UMAP projection.

name

label to use for this projection

source

coordinates to use to compute tSNE Choices are either "LatentSpace" (default) or "Proteins"

Value

VISION object with the projection added to @Projections slot


YosefLab/FastProjectR documentation built on June 13, 2024, 4:20 p.m.