calculateTrajectoryDistances: Calculate distance matrix between all pairs of ponts based on...

In YosefLab/FastProjectR: Functional interpretation of single cell RNA-seq latent manifolds

Calculate distance matrix between all pairs of ponts based on their projection onto the tree

Description

Calculate distance matrix between all pairs of ponts based on their projection onto the tree

Usage

calculateTrajectoryDistances(adjMat, edgeAssoc, edgePos, latentPnts = NULL)

Arguments

adjMat	(K x K logical) adjacency matrix of the milestones
edgeAssoc	(2 x N) for each point, the edge it is projected to (represented as (V1,V2), where V1<V2)
edgePos	(length N, numeric) relative postion on the edge for each point, in range [0,1]
latentPnts	(D x K numeric) the spatial locations of the milestones

Value

non-negative symmetric matrix in which [i,j] is the tree-based distance between points i, j.

YosefLab/FastProjectR documentation built on Feb. 15, 2023, 6:21 a.m.