In YuLab-SMU/GOSemSim: GO-terms Semantic Similarity Measures

library("badger")
library("yulab.utils")

GOSemSim: GO semantic similarity measurement

r badge_bioc_release("GOSemSim", "green") r badge_devel("guangchuangyu/GOSemSim", "green") r badge_bioc_download("GOSemSim", "total", "blue") r badge_bioc_download("GOSemSim", "month", "blue")

cat(packageDescription('GOSemSim')$Description)

:writing_hand: Authors

Guangchuang YU https://yulab-smu.top

School of Basic Medical Sciences, Southern Medical University

Learn more at https://yulab-smu.top/contribution-knowledge-mining/.

If you use r Biocpkg('GOSemSim') in published research, please cite:

• Yu G. Gene Ontology Semantic Similarity Analysis Using GOSemSim. In: Kidder B. (eds) Stem Cell Transcriptional Networks. Methods in Molecular Biology, 2020, 2117:207-215. Humana, New York, NY.
• Yu G^#^, Li F^#^, Qin Y, Bo X^*^, Wu Y and Wang S^*^. GOSemSim: an R package for measuring semantic similarity among GO terms and gene products. Bioinformatics. 2010, 26(7):976-978.

:arrow_double_down: Installation

Get the released version from Bioconductor:

## try http:// if https:// URLs are not supported
if (!requireNamespace("BiocManager", quietly=TRUE))
    install.packages("BiocManager")
## BiocManager::install("BiocUpgrade") ## you may need this
BiocManager::install("GOSemSim")

Or the development version from github:

## install.packages("remotes")
remotes::install_github("GuangchuangYu/GOSemSim")

:sparkling_heart: Contributing

We welcome any contributions! By participating in this project you agree to abide by the terms outlined in the Contributor Code of Conduct.

YuLab-SMU/GOSemSim documentation built on Aug. 25, 2024, 3 a.m.