convert_to_treedata: convert dataframe contained hierarchical relationship or...

In YuLab-SMU/MicrobiotaProcess: A comprehensive R package for managing and analyzing microbiome and other ecological data within the tidy framework

convert dataframe contained hierarchical relationship or other classes to treedata class

Description

convert dataframe contained hierarchical relationship or other classes to treedata class

Usage

convert_to_treedata(data, type = "species", include.rownames = FALSE, ...)

Arguments

data	data.frame, such like the tax_table of phyloseq.
type	character, the type of datasets, default is "species", if the dataset is not about species, #' such as dataset of kegg function, you should set it to "others".
include.rownames	logical, whether to set the row names as the tip labels, default is FALSE.
...	additional parameters.

Value

treedata class.

Author(s)

Shuangbin Xu

Examples

## Not run: 
  data(hmp_aerobiosis_small)
  head(taxda)
  treedat <- convert_to_treedata(taxda, include.rownames = FALSE)

## End(Not run)

YuLab-SMU/MicrobiotaProcess documentation built on Nov. 8, 2024, 4:37 p.m.