get_mean_median: get the mean and median of specific feature.

In YuLab-SMU/MicrobiotaProcess: A comprehensive R package for managing and analyzing microbiome and other ecological data within the tidy framework

get the mean and median of specific feature.

Description

get the mean and median of specific feature.

Usage

get_mean_median(datameta, feature, subclass)

Arguments

datameta	data.frame, nrow sample * ncol feature + factor.
feature	character vector, the feature contained in datameta.
subclass	character, factor name.

Value

featureMeanMedian object, contained the abundance of feature, and the mean and median of feature by subclass.

Author(s)

Shuangbin Xu

Examples

## Not run: 
    data(hmp_aerobiosis_small)
    head(sampleda)
    featureda <- merge(featureda, sampleda, by=0)
    rownames(featureda) <- as.vector(featureda$Row.names)
    featureda$Row.names <- NULL
    feameamed <- get_mean_median(datameta=featureda, 
                        feature="p__Actinobacteria", 
                        subclass="body_site")
    fplot <- ggdifftaxbar(feameamed, featurename="p__Actinobacteria", 
                         classgroup="oxygen_availability", subclass="body_site")

## End(Not run)

YuLab-SMU/MicrobiotaProcess documentation built on Nov. 8, 2024, 4:37 p.m.