diffAnalysisClass-class: diffAnalysisClass class

In YuLab-SMU/MicrobiotaProcess: A comprehensive R package for managing and analyzing microbiome and other ecological data within the tidy framework

diffAnalysisClass class

Description

diffAnalysisClass class

Slots

originalD

original feature data.frame.

sampleda

associated sample information.

taxda

the data.frame contained taxonomy.

result

data.frame contained the results of first, second test and LDA or rf

kwres

the results of first test, contained feature names, pvalue and fdr.

secondvars

the results of second test, contained features names, gfc (TRUE representation the relevant feantures is enriched in relevant factorNames), Freq(the number of TRUE or FALSE), factorNames.

mlres

the results of LDA or randomForest,

someparams,

some arguments will be used in other functions diff_analysis

YuLab-SMU/MicrobiotaProcess documentation built on Nov. 8, 2024, 4:37 p.m.