mp_aggregate-methods: aggregate the assays with the specific group of sample and...

In YuLab-SMU/MicrobiotaProcess: A comprehensive R package for managing and analyzing microbiome and other ecological data within the tidy framework

aggregate the assays with the specific group of sample and fun.

Description

aggregate the assays with the specific group of sample and fun.

Usage

mp_aggregate(.data, .abundance, .group, fun = sum, keep_colData = TRUE, ...)

## S4 method for signature 'MPSE'
mp_aggregate(.data, .abundance, .group, fun = sum, keep_colData = TRUE, ...)

Arguments

.data	MPSE object, required
.abundance	the column names of abundance, default is Abundance.
.group	the column names of sample meta-data, required
fun	a function to compute the summary statistics, default is sum.
keep_colData	logical whether to keep the sample meta-data with .group as row names, default is TRUE.
...	additional parameters, see also aggregate.

Value

a new object with .group as column names in assays

Examples

## Not run: 
data(mouse.time.mpse)
newmpse <- mouse.time.mpse %>%
           mp_aggregate(.group = time)
newmpse

## End(Not run)

YuLab-SMU/MicrobiotaProcess documentation built on Nov. 8, 2024, 4:37 p.m.