API for YuLab-SMU/ggmsa
Plot Multiple Sequence Alignment using 'ggplot2'
| Global functions | |
|---|---|
| .onAttach | Source code |
| DNAbin2DNAStringSet | Source code |
| GVariation | Man page |
| Gram-negative_AKL.fasta | Man page |
| Gram-positive_AKL.fasta | Man page |
| LeaderRepeat_All.fa | Man page |
| Rfam | Man page |
| SeedStar | Source code |
| SeqDiff-class | Man page |
| TP53_genes.xlsx | Man page |
| adjust_ally | Man page Source code |
| adjust_treey | Source code |
| assign_dms | Man page Source code |
| available_colors | Man page Source code |
| available_fonts | Man page Source code |
| available_msa | Man page Source code |
| bar_data | Source code |
| bar_theme | Source code |
| colorBy_length | Source code |
| colorBy_value | Source code |
| color_Clustal | Source code |
| color_helix | Source code |
| color_increment | Source code |
| color_scheme | Source code |
| color_visibility | Source code |
| content_GC | Source code |
| diff.SeqDiff | Source code |
| extract_seq | Man page Source code |
| facet_data | Source code |
| facet_msa | Man page Source code |
| facet_scale | Source code |
| geom_GC | Man page Source code |
| geom_GC1 | Source code |
| geom_asterisk | Source code |
| geom_helix | Man page Source code |
| geom_logo | Source code |
| geom_msa | Man page Source code |
| geom_msaBar | Man page Source code |
| geom_seed | Man page Source code |
| geom_seed1 | Source code |
| geom_seqlogo | Man page Source code |
| get_asteriskScale | Source code |
| ggSeqBundle | Man page Source code |
| gghelix | Man page Source code |
| ggmaf | Man page Source code |
| ggmsa | Man page Source code |
| ggplot_add.GCcontent | Source code |
| ggplot_add.facet_msa | Source code |
| ggplot_add.msaBar | Source code |
| ggplot_add.nucleotideeHelix | Source code |
| ggplot_add.seed | Source code |
| ggplot_add.seqlogo | Source code |
| layer_helix | Source code |
| ly_bar | Source code |
| make_gap | Source code |
| merge_seq | Man page Source code |
| msa_data | Source code |
| nucleotide_difference | Source code |
| nucleotide_difference_count | Source code |
| overlap_helix | Source code |
| plot | Man page |
| plot,SeqDiff,ANY-method | Man page |
| plot_difference | Source code |
| plot_difference_count | Source code |
| prepare_msa | Source code |
| readSSfile | Man page Source code |
| read_maf | Man page Source code |
| reset_pos | Man page Source code |
| sample.fasta | Man page |
| seedSample.fa | Man page |
| seqdiff | Man page Source code |
| seqlogo | Man page Source code |
| seqlogo_data | Source code |
| sequence-link-tree.fasta | Man page |
| show | Man page |
| show,SeqDiff-method | Man page |
| simplify_hdata | Man page Source code |
| simplot | Man page Source code |
| theme_helix | Source code |
| theme_msa | Man page Source code |
| tidy_color | Source code |
| tidy_hdata | Man page Source code |
| tidy_helix | Source code |
| tidy_list_helix | Source code |
| tidy_maf_df | Man page Source code |
| tidy_msa | Man page Source code |
| tp53.fa | Man page |
| treeMSA_plot | Man page Source code |
