seqdiff: seqdiff
In YuLab-SMU/ggmsa: Plot Multiple Sequence Alignment using 'ggplot2'
seqdiff R Documentation
seqdiff
Description
calculate difference of two aligned sequences
Usage
seqdiff(fasta, reference = 1)
Arguments
fasta
fasta file
reference
which sequence serve as reference, 1 or 2
Value
SeqDiff object
Author(s)
guangchuang yu
Examples
fas <- list.files(system.file("extdata", "GVariation", package="ggmsa"),
pattern="fas", full.names=TRUE)
seqdiff(fas[1], reference=1)
YuLab-SMU/ggmsa documentation built on Aug. 26, 2022, 1:48 a.m.
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| seqdiff | R Documentation |
seqdiff
Description
calculate difference of two aligned sequences
Usage
seqdiff(fasta, reference = 1)
Arguments
fasta |
fasta file |
reference |
which sequence serve as reference, 1 or 2 |
Value
SeqDiff object
Author(s)
guangchuang yu
Examples
fas <- list.files(system.file("extdata", "GVariation", package="ggmsa"),
pattern="fas", full.names=TRUE)
seqdiff(fas[1], reference=1)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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