tidy_msa: tidy_msa
In YuLab-SMU/ggmsa: Plot Multiple Sequence Alignment using 'ggplot2'
tidy_msa R Documentation
tidy_msa
Description
Convert msa file/object to tidy data frame.
Usage
tidy_msa(msa, start = NULL, end = NULL)
Arguments
msa
multiple sequence alignment file or sequence object in
DNAStringSet, RNAStringSet, AAStringSet, BStringSet, DNAMultipleAlignment,
RNAMultipleAlignment, AAMultipleAlignment, DNAbin or AAbin
start
start position to extract subset of alignment
end
end position to extract subset of alignemnt
Value
tibble data frame
Author(s)
Guangchuang Yu
Examples
fasta <- system.file("extdata", "sample.fasta", package = "ggmsa")
aln <- tidy_msa(msa = fasta, start = 10, end = 100)
YuLab-SMU/ggmsa documentation built on Aug. 26, 2022, 1:48 a.m.
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| tidy_msa | R Documentation |
tidy_msa
Description
Convert msa file/object to tidy data frame.
Usage
tidy_msa(msa, start = NULL, end = NULL)
Arguments
msa |
multiple sequence alignment file or sequence object in DNAStringSet, RNAStringSet, AAStringSet, BStringSet, DNAMultipleAlignment, RNAMultipleAlignment, AAMultipleAlignment, DNAbin or AAbin |
start |
start position to extract subset of alignment |
end |
end position to extract subset of alignemnt |
Value
tibble data frame
Author(s)
Guangchuang Yu
Examples
fasta <- system.file("extdata", "sample.fasta", package = "ggmsa")
aln <- tidy_msa(msa = fasta, start = 10, end = 100)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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