ggmaf: ggmaf

In YuLab-SMU/ggmsa: Plot Multiple Sequence Alignment using 'ggplot2'

ggmaf

Description

plot MAF

Usage

ggmaf(
  data,
  ref,
  block_start = NULL,
  block_end = NULL,
  facet_field = NULL,
  heights = c(0.4, 0.6),
  facet_heights = NULL
)

Arguments

data	a tidy MAF data frame.You can get it by tidy_maf_df()
ref	character, the name of reference genome. eg:"hg38.chr1_KI270707v1_random"
block_start	a numeric vector(>0). The start block to plot.
block_end	a numeric vector(< max block). The end block to plot.
facet_field	a numeric vector. The field in a facet panel.
heights	two numeric vector.The plot proportion between "Genomic location" panel(upon) and "Alignment" panel(down). Default:c(0.4,0.6)
facet_heights	Numeric vectors.The facet proportion.

Value

ggplot object

Author(s)

Lang Zhou

YuLab-SMU/ggmsa documentation built on Aug. 26, 2022, 1:48 a.m.