read.codeml: read.codeml
In YuLab-SMU/treeio: Base Classes and Functions for Phylogenetic Tree Input and Output
read.codeml R Documentation
read.codeml
Description
read baseml output
Usage
read.codeml(rstfile, mlcfile, tree = "mlc", type = "Joint")
Arguments
rstfile
rst file
mlcfile
mlc file
tree
one of 'mlc' or 'rst'
type
one of 'Marginal' or 'Joint'
Value
A treedata object
Author(s)
Guangchuang Yu
Examples
rstfile <- system.file("extdata/PAML_Codeml", "rst", package="treeio")
mlcfile <- system.file("extdata/PAML_Codeml", "mlc", package="treeio")
read.codeml(rstfile, mlcfile)
YuLab-SMU/treeio documentation built on Nov. 3, 2024, 4:17 p.m.
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| read.codeml | R Documentation |
read.codeml
Description
read baseml output
Usage
read.codeml(rstfile, mlcfile, tree = "mlc", type = "Joint")
Arguments
rstfile |
rst file |
mlcfile |
mlc file |
tree |
one of 'mlc' or 'rst' |
type |
one of 'Marginal' or 'Joint' |
Value
A treedata object
Author(s)
Guangchuang Yu
Examples
rstfile <- system.file("extdata/PAML_Codeml", "rst", package="treeio")
mlcfile <- system.file("extdata/PAML_Codeml", "mlc", package="treeio")
read.codeml(rstfile, mlcfile)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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