read.mcmctree: read.mcmctree
In YuLab-SMU/treeio: Base Classes and Functions for Phylogenetic Tree Input and Output
read.mcmctree R Documentation
read.mcmctree
Description
read MCMCTree output Tree
Usage
read.mcmctree(file, force.ultrametric = FALSE)
Arguments
file
the output tree file of MCMCTree
force.ultrametric
logical whether convert the tree
to be ultrametric, if it is not ultrametric, default is FALSE.
When the tree is ultrametric, branch times will be calculated
automatically.
Value
treedata object
Examples
file <- system.file("extdata/MCMCTree", "mcmctree_output.tree", package="treeio")
tr <- read.mcmctree(file)
tr
YuLab-SMU/treeio documentation built on Nov. 3, 2024, 4:17 p.m.
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| read.mcmctree | R Documentation |
read.mcmctree
Description
read MCMCTree output Tree
Usage
read.mcmctree(file, force.ultrametric = FALSE)
Arguments
file |
the output tree file of MCMCTree |
force.ultrametric |
logical whether convert the tree to be ultrametric, if it is not ultrametric, default is FALSE. When the tree is ultrametric, branch times will be calculated automatically. |
Value
treedata object
Examples
file <- system.file("extdata/MCMCTree", "mcmctree_output.tree", package="treeio")
tr <- read.mcmctree(file)
tr
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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