read.treeqza: read.treeqza

In YuLab-SMU/treeio: Base Classes and Functions for Phylogenetic Tree Input and Output

read.treeqza

Description

read.treeqza

Usage

read.treeqza(treeqza, node.label = "label", ...)

Arguments

treeqza	the qiime2 output file contained tree file.
node.label	parse node label as 'label' or 'support' value.
...	additional parameter, passed to 'read.tree'.

Value

phylo tree object or treedata object when node.label was parsed 'support'.

Examples

qzafile1 <- system.file("extdata/qiime2treeqza", "fasttree-tree.qza", package="treeio")
qzafile2 <- system.file("extdata/qiime2treeqza", "iqt-tree.qza", package="treeio")
qzafile3 <- system.file("extdata/qiime2treeqza", "raxml-cat-tree.qza", package="treeio")
tr1 <- read.treeqza(qzafile1)
tr1
tr2 <- read.treeqza(qzafile2)
tr2
tr3 <- read.treeqza(qzafile3)
tr3
# parse node label as 'support' value.
qzafile4 <- system.file("extdata/qiime2treeqza", "raxml-cat-bootstrap-tree.qza", package="treeio")
tr4 <- read.treeqza(qzafile4, node.label="support")
tr4

YuLab-SMU/treeio documentation built on Nov. 3, 2024, 4:17 p.m.