read.hyphy: read.hyphy
In YuLab-SMU/treeio: Base Classes and Functions for Phylogenetic Tree Input and Output
read.hyphy R Documentation
read.hyphy
Description
read HYPHY output
Usage
read.hyphy(nwk, ancseq, tip.fasfile = NULL)
Arguments
nwk
tree file in nwk format, one of hyphy output
ancseq
ancestral sequence file in nexus format,
one of hyphy output
tip.fasfile
tip sequence file
Value
A hyphy object
Author(s)
Guangchuang Yu https://guangchuangyu.github.io
Examples
nwk <- system.file("extdata/HYPHY", "labelledtree.tree", package="treeio")
ancseq <- system.file("extdata/HYPHY", "ancseq.nex", package="treeio")
read.hyphy(nwk, ancseq)
YuLab-SMU/treeio documentation built on Nov. 3, 2024, 4:17 p.m.
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| read.hyphy | R Documentation |
read.hyphy
Description
read HYPHY output
Usage
read.hyphy(nwk, ancseq, tip.fasfile = NULL)
Arguments
nwk |
tree file in nwk format, one of hyphy output |
ancseq |
ancestral sequence file in nexus format, one of hyphy output |
tip.fasfile |
tip sequence file |
Value
A hyphy object
Author(s)
Guangchuang Yu https://guangchuangyu.github.io
Examples
nwk <- system.file("extdata/HYPHY", "labelledtree.tree", package="treeio")
ancseq <- system.file("extdata/HYPHY", "ancseq.nex", package="treeio")
read.hyphy(nwk, ancseq)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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