rename_taxa: rename_taxa

In YuLab-SMU/treeio: Base Classes and Functions for Phylogenetic Tree Input and Output

rename_taxa

Description

rename tip label of phylogenetic tree

Usage

rename_taxa(tree, data, key = 1, value = 2)

Arguments

tree	tree object, either treedata or phylo
data	data frame
key	column in data that match tip label (use 1st column by default)
value	column in data for rename tip label (use 2nd column by default)

Value

tree object

Author(s)

Guangchuang Yu

Examples

tree <- rtree(3)
d <- data.frame(old = paste0('t', 1:3), new = LETTERS[1:3])
rename_taxa(tree, d)
rename_taxa(tree, d, old, new)

YuLab-SMU/treeio documentation built on Nov. 3, 2024, 4:17 p.m.