MBttest-package: Multiple Beta t-tests

Description Details Author(s) References See Also Examples

Description

This package is used to peform multiple beta t-test analyses of real data and gives heatmap of differential expressions of genes or differential splicings. The results listing geneid or isoformid, gene name, the other information, t-value, p-value, adjusted p-value, adjusted alpha value, rho, and symb are saved in csv file.

Details

Package: MBttest
Type: Package
Version: 1.0
Date: 2015-01-02
License: GPL-3

Author(s)

Yuan-De Tan

Maintainer: Yuan-De Tan [email protected]

References

Baggerly KA, Deng L, Morris JS, Aldaz CM (2003) Differential expression in SAGE: accounting for normal between-library variation. Bioinformatics, 19: 1477-1483.
Yuan-De Tan Anita M. Chandler, Arindam Chaudhury, and Joel R. Neilson(2015) A Powerful Statistical Approach for Large-scale Differential Transcription Analysis.Plos One,10.1371/journal.pone.0123658.

See Also

betaparametab, betaparametVP, betaparametw, betattest, mbetattest, maplot, myheatmap, oddratio, pratio, simulat, smbetattest, mtprocedure, mtpvadjust

Examples

1
2
data(jkttcell) 	
mbetattest(X=jkttcell[1:500,],na=3,nb=3,W=1,alpha=0.05,file="jurkat_NS_48h_tag_mbetattest.csv")

Yuande/MBttest documentation built on April 29, 2018, 8:05 a.m.