betaparametab: Estimation of Beta Parameters alpha and beta

Description Usage Arguments Value Author(s) References See Also Examples

View source: R/betaparametab.R

Description

parameters alpha(a) and beta (b) in beta distribution are estimated by using an iteration algorithm.

Usage

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betaparametab(xn, w, P, V)

Arguments

xn

column vector, a set of library sizes.

w

column vector, a set of weights

P

proportion of counts of a gene or an isoform

V

variance for proportions of counts of a gene or an isoform over m replicate libraries in a condition

Value

return parameters a and b.

Author(s)

Yuan-De Tan [email protected]

References

Baggerly KA, Deng L, Morris JS, Aldaz CM (2003) Differential expression in SAGE: accounting for normal between-library variation. Bioinformatics 19: 1477-1483.

See Also

betaparametVP, betaparametw

Examples

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XX<-c(2000,2000,2000)
p<-0.15
V=0.004
w<-c(0.3,0.3,0.3)
betaparametab(xn=XX,w=w,P=p,V=V)
#[1] 1.145868 6.493254

Yuande/MBttest documentation built on April 29, 2018, 8:05 a.m.