dat: The Transcriptomic data and t-test results.

In Yuande/MBttest: Multiple Beta t-Tests

The Transcriptomic data and t-test results.

Description

t-value and rho are results ouputed by mbttest.

Usage

data("dat")

Format

A data frame with 13409 observations on the following 16 variables.

tagid

a numeric vector

geneid

a numeric vector

name

a string vector

chr

a string vector

strand

a character vector

pos

a numeric vector

anno

a string vector

Jurk.NS.A

a numeric vector

Jurk.NS.B

a numeric vector

Jurk.NS.C

a numeric vector

Jurk.48h.A

a numeric vector

Jurk.48h.B

a numeric vector

Jurk.48h.C

a numeric vector

beta_t

a numeric vector

rho

a numeric vector

symb

a character vector

Details

t-values (beta_t)and means over all replicate libraries in two conditions are used to make MA plot. The count data of DE isoforms are selected by symb ="+" and W(omega) and used to make heatmap using myheatmap function.

Value

ID, information, count data of RNA reads,t-value and rho-value, symbol.

References

Yuan-De Tan Anita M. Chandler, Arindam Chaudhury, and Joel R. Neilson(2015) A Powerful Statistical Approach for Large-scale Differential Transcription Analysis.Plos One. DOI: 10.1371/journal.pone.0123658.

Examples

data(dat)
## maybe str(dat) ; plot(dat) ...

Yuande/MBttest documentation built on Aug. 25, 2022, 12:58 a.m.