README.md

In aGutierrezSacristan/comorbidity: Analyze comorbidities from electronic health record data

comoRbidity

comoRbidity is an R package to analyze comorbidities from clinical data

What is this repository for?

This report is used for comoRbidity package distribution while we walk thought publication process.

Package' Status

• Version: 1.1.1
• Authors: Alba Gutierrez-Sacristan (GRIB-UPF / HMS)
• Maintainer: Alba Gutierrez-Sacristan (GRIB-UPF / HMS)

How to start

Installation

comoRbidity can be installed using devtools from this repository:

library(devtools)
install_bitbucket("ibi_group/comoRbidity")

comoRbidity:

The following lines show one examples of how comoRbidity R package can be used in comorbidity studies:

• Example Query

library(comoRbidity)
ex1 <- query( databasePth      = system.file("extdata", package="comoRbidity"),
               codesPth         = system.file("extdata", "indexDiseaseCodes.txt", package="comoRbidity"),
               birthDataSep     = "-",
               admissionDataSep = "-",
               determinedCodes  = FALSE,
               python           = FALSE)
)

• Heatmap Representation

library(comoRbidity)
load(system.file("extdata", "comorMale.RData", package="comoRbidity"))
htmp <- heatmapPlot( input      = comorMale, 
               selectValue       = "score", 
               cutOff     = 0.5
        )

```

aGutierrezSacristan/comorbidity documentation built on April 10, 2020, 5:54 p.m.