populationAge: Age distribution comparison: patients subset vs all...

In aGutierrezSacristan/comorbidity: Analyze comorbidities from electronic health record data

Description

Given an object of class comoRbidity the age distribution of your patients of interest (those that have at least one code of the ones contained in indexDiseaseCodes.txt file) is represent comparing with the age distribution of the your whole patients database.

Usage

populationAge(input, codesPth, databasePth, type = "together",
  disorderColor = "gold", allColor = "darkblue", interactive = FALSE,
  verbose = FALSE, warnings = TRUE)

Arguments

input	A comorbidity object, obtained with the query function.
codesPth	Determines the path where the file with the index diseases is located (indexDiseaseCode)
databasePth	Determines the path where the three required input files (patientData, diagnosisData, admissionData) are located.
type	by Befault 'together'. This argument allows the user to select the output barplot type. The other possible option is 'separate'
disorderColor	Determines the bar color representing the disorder patients. By default gold.
allColor	Determines the bar color representing the whole population. By default darkblue.
interactive	Determines if the output barplot is interactive or not. By default the interactive argument is set up as FALSE. The value of the argument can be changed to TRUE, as a result an interactive barplot will be obtained.
verbose	By default FALSE. Change it to TRUE to get a on-time log from the function.
warnings	By default TRUE. Change it to FALSE to don't see the warnings.

Value

A barplot comparing the ages distributions

Examples

load(system.file("extdata", "comorbidity.RData", package="comoRbidity"))
popAge <- populationAge( input       = comor_obj, 
                         codesPth    = system.file("extdata", package="comoRbidity"), 
                         databasePth = system.file("extdata", package="comoRbidity"),
                         type        = "separate"
              )

aGutierrezSacristan/comorbidity documentation built on April 10, 2020, 5:54 p.m.