diseasePrevalence: A graphical summary of the disease prevalence.

In aGutierrezSacristan/comorbidity: Analyze comorbidities from electronic health record data

Description

Given an object of class comorbidity, and the characters used to specify the sex, a barplot showing the disease prevalence in general and according to sex is obtained.

Usage

diseasePrevalence(input, maleCode = "Male", femaleCode = "Female",
  databasePth, barColor = "lightblue", verbose = FALSE,
  warnings = TRUE)

Arguments

input	Object of comorbidity class.
maleCode	Characters(s) used to determine the male condition of a patient. Depending on the database it can be determined, for example, as Male, . MALE, M, with digits as 0 or 1.
femaleCode	Characters(s) used to determine the female condition of a patient. Depending on the database it can be determined, for example, as Female, . FEMALE, F, with digits as 0 or 1.
databasePth	Determines the path where the three required input files (patientData, diagnosisData, admissionData) are located.
barColor	Determines the bar color. By default lightblue.
verbose	By default FALSE. Change it to TRUE to get a on-time log from the function.
warnings	By default TRUE. Change it to FALSE to don't see the warnings.

Value

A barplot with disease prevalence in all the population and according to the sex.

Examples

load(system.file("extdata", "comorbidity.RData", package="comoRbidity"))
diseasePrevalence( input      = comor_obj, 
           maleCode   = "Male", 
           femaleCode = "Female",
           databasePth      = system.file("extdata", package="comoRbidity"), 
           barColor    = "darkcyan"
           )

aGutierrezSacristan/comorbidity documentation built on April 10, 2020, 5:54 p.m.