In aaronwolen/metafiler: metagenomic profile plots

knitr::opts_chunk$set(
  echo = TRUE,
  collapse = TRUE,
  comment = "#>",
  fig.height = 3
)
knitr::opts_knit$set(upload.fun = knitr::imgur_upload)

metafiler

Taxonomic profile visualizations.

Installation

# install.packages(c("devtools", "knitr", "rmarkdown"))
source("http://www.bioconductor.org/biocLite.R")
biocLite("Biobase")
devtools::install_github("aaronwolen/metafiler", build_vignettes = TRUE)

Demo

library(metafiler)
data(profiles)

profiles <- add_max_feature(profiles)
profile_barplot(profiles)

More information can be found in the vignette:

vignette("metafiler-intro", package = "metafiler")

aaronwolen/metafiler documentation built on Feb. 16, 2024, 12:41 a.m.