alphaThreshold: Alpha threshold

In acidgenomics/DESeqAnalysis: Acid Genomics DESeq2 Analysis Utilities

Alpha threshold

Description

Alpha threshold

Usage

alphaThreshold(object, ...)
alphaThreshold(object, ...) <- value

## S4 method for signature 'DESeqAnalysis'
alphaThreshold(object)

## S4 method for signature 'DESeqAnalysisList'
alphaThreshold(object)

## S4 method for signature 'DESeqResults'
alphaThreshold(object)

## S4 method for signature 'DESeqResultsList'
alphaThreshold(object)

## S4 replacement method for signature 'DESeqAnalysis,numeric'
alphaThreshold(object) <- value

## S4 replacement method for signature 'DESeqAnalysis,'NULL''
alphaThreshold(object) <- value

## S4 replacement method for signature 'DESeqAnalysisList,numeric'
alphaThreshold(object) <- value

## S4 replacement method for signature 'DESeqAnalysisList,'NULL''
alphaThreshold(object) <- value

## S4 replacement method for signature 'DESeqResults,numeric'
alphaThreshold(object) <- value

## S4 replacement method for signature 'DESeqResultsList,numeric'
alphaThreshold(object) <- value

## S4 replacement method for signature 'DESeqResultsList,'NULL''
alphaThreshold(object) <- value

Arguments

object	Object.
value	Value to assign.
...	Additional arguments.

Details

Assumes 0.01 by default if unset.

Value

numeric(1). Alpha cutoff level.

Note

Updated 2021-03-10.

Examples

data(deseq)

## DESeqAnalysis ====
object <- deseq
alphaThreshold(object) <- 0.05
alphaThreshold(object)

acidgenomics/DESeqAnalysis documentation built on March 27, 2024, 10:32 p.m.